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AMP, through the Economic Affairs Committee (EAC), addresses short and long-term issues associated with coding, coverage, and reimbursement for molecular pathology through the following activities:
Monitoring and responding to newly released molecular National Coverage Decisions (NCDs) and Local Coverage Decisions (LCDs);
Advising on AMP’s position regarding Current Procedural Terminology (CPT) code proposals at the Pathology Coding Caucus;
Providing recommendations and input to CMS during their Annual Pricing Exercise;
Advocating with CMS regarding actions taken by Medicare Administrative Contractors (MACs);
Collaborating with the College of American Pathologists (CAP) on coding, coverage, and reimbursement advocacy issues, including submitting joint letters;
Advocating for reasonable reimbursement for the professional work involved in interpreting a molecular diagnostic test result and preparing a personalized report;
And providing education on the topic of coding, coverage, and reimbursement for molecular pathology to AMP members and other interested stakeholders.
You can read more about AMP's recent activities below.
Background: The world of coding, coverage, and reimbursement for molecular pathology is incredibly complex and loaded with jargon and acronyms. In 2020, the AMP EAC published an overview of molecular pathology economics in the hopes that it can serve as an educational resource for residents, molecular pathologists, and clinical molecular geneticists, as well as laboratory directors and hospital/laboratory administrators who seek to understand the complex landscape of molecular pathology economics.
Manuscript can be viewed here.
Presentation by the authors can be viewed here.
AMP participates in current procedural terminology (CPT) coding and the pricing of molecular pathology codes. Throughout the year, it submits new CPT code change proposals based on member need and input.
There are a number of different coding systems involved with laboratory medicine, including:
| Current Procedural Terminology (CPT) Codes | Uniform set of codes describing services provided by physicians, hospitals, and health care providers. Intellectual property of the American Medical Association (AMA), developed and updated by the CPT Editorial Panel. |
| PLA Codes | Subset of CPT Codes that allow laboratories or manufacturers to specifically identify and track their test, developed under PAMA. |
| G Codes | Generated and used by CMS, represent medical procedures. For example, G0452 identifies any physician work involved for interpretation of molecular pathology procedures. |
| Coding Modifiers | 2 digit CPT code modifier that allows for preemptive explanation of a procedure code or further classification of the nature of a billed service. |
| MolDX Program Z Codes | Used to identify an individual molecular diagnostic laboratory test and allow transparent tracking of relevant utilization and technical information by some Medicare Administrative Contractors (MACs). |
| ICD-10 Codes | Classification that describes the clinical diagnosis, condition, or scenario associated with a specific health care encounter. |
Notes about CPT Codes: HIPAA (1996) mandated the use of specific code sets for diagnoses and procedures to be used in all transactions, including CPT. Having a CPT code indicates maturity and vetting of the test. If no CPT code exists, assay is billed using a "not otherwise specified" or NOS code, which may result in difficulty getting paid. However, a CPT code does not guarantee that a test will be paid for...or that the reimbursement will be appropriate!
New CPT codes can be created by the submission of a Code Change Application through the AMA CPT Smart App.
The Code then goes through:
Advisory Committee review:
The application is then referred to the CPT Advisory Committee for evaluation and commentary.
Editorial Panel review:
Finally, the CPT Editorial Panel takes action on the application. Applicants may need to present their proposal to the Panel.
The AMP EAC New Codes and Pricing Subcommittee:
AMP provides written and oral comments to the Centers for Medicare & Medicaid Services regarding the Clinical Laboratory Fee Schedule. AMP also advocates for Protecting Access to Medicare Act of 2014 (PAMA) reform.
Each year in July, CMS holds a public meeting for the laboratory payment for new clinical test codes. Stakeholders present in person or submit written comments with rationale for payment recommendations. CMS then determins the basis of payments for codes: crosswalk or gapfill.
A new or revised code is "crosswalked" when the payment rate is determined by comparison to a similar existing code.
A new or revised code is "gapfilled" when no similar code exists and each Medicare Administrative Contractor (MAC) independently establishes a payment amount and submits those values to CMS. MACs are to use the following information in their rate setting process: the charges for the test and routine discounts to charges, the cost of resources to perform the test, payment amounts determined by other payers, and charges, payment amounts, and resources required for other tests that may be comparable or otherwise relevant. During the gapfill process, laboratories need to educate MACs and commercial payers about the cost and value of new procedures.
The final Clinical Lab Fee Schedule (CLFS), with the payment determinations for each code, is then posted in late fall.
The Problem
The Protecting Access to Medicare Act (PAMA) of 2014 included a provision that tied Medicare reimbursement for clinical laboratory services to private payer rates. The first rate setting period under the PAMA methodology resulted in significant reimbursement cuts for many of these services. After this first pricing exercise, the reimbursement for many services no longer reflects the supplies and work required to perform the procedure.
AMP conducted a survey[1] of its membership to understand the financial and logistical effects of the implementation of the PAMA rates for clinical laboratory services. We found that the reimbursement cuts from PAMA will continue to have a negative effect on laboratory practices and patient access. Specifically, we solicited responses on innovation in molecular diagnostics, patient access, and burden.
Decreasing Reimbursement Will Stifle Innovation
Decreasing Reimbursement May Limit Patient Access to Testing
Cuts From PAMA Threaten Health Equity
The AMP EAC New Codes and Pricing Subcommittee:
AMP monitors emerging policies and works with various groups on the coverage of molecular testing. It weighs in on both local and national coverage determinations
Coverage is the determination whether and in what cases to pay for a service.
In the US, there are a number of different payers for molecular pathology services. The governmental (public) payer is CMS, which includes Medicare (Part A, B, C, and D) and the State Medicaid programs. The commercial (private) payers include numerous private health insurers that offer plans with various coverage options (including employer group plans) and large corporations/business that self-insure.
Coverage and payment policies may differ between public and private payers, depending on type of molecular testing, for example:
Private payers can choose to follow Medicare coverage rulings, although many perform independent determinations for each medical procedure (CPT). Medicare coverage is limited to items and services that are reasonable and necessary for the diagnosis or treatment of an illness or injury.
Medicare coverage is determined through two processes:
A MAC is a private health care insurer that has been awarded a geographic jurisdiction by CMS to process Medicare Part A and Part B (A/B) medical claims or Durable Medical Equipment (DME) claims for Medicare Fee-For-Service (FFS) beneficiaries. MACs cover 12 geographic jurisdictions, as seen in the map below. MACs serve as the primary operational contact between the Medicare FFS program and the healthcare providers enrolled in the program. MACs are informed by Carrier Advisory Committees (CAC) – one per state.

A/B Medicare administrative contractor (MAC) jurisdictions as of October 2017. From “Map of A/B MAC Jurisdictions as of June 2019,” by the Centers for Medicare & Medicaid Services, last accessed June 1, 2019. In the public domain. CGS, CGS Administrators, LLC; J5, Jurisdiction 5; J6, Jurisdiction 6; J8, Jurisdiction 8; J15, Jurisdiction 15; JE, Jurisdiction E; JF, Jurisdiction F; JH, Jurisdiction H; JJ, Jurisdiction J; JK, Jurisdiction K; JL, Jurisdiction L; JM, Jurisdiction M; JN-FCSO, Jurisdiction N–First Coast Service Options, Inc; NGS, National Government Services, Inc.; WPS, Wisconsin Physicians Service Government Health Administrators.
In 2011, one of the MACs, Palmetto, developed a very pro-active approach to Molecular Testing in the MolDx program:
The AMP EAC Coverage Subcommittee monitors and responds to draft LCDs for molecular pathology with help from AMP member subject matter experts. AMP's LCD comments are frequently done in collaboration with the College of American Pathologists (CAP).
You can also view all of AMP's comments on LCDs here.
Commercial, third party payers vary in their level of sophistication dealing with Molecular Pathology tests. Commercial payers still use CPT codes and can be more lenient with their coverage and reimbursement policies.
Private payers are also dealing with the monumental task of determining appropriate coverage and reimbursement for molecular tests. AMP has provided expert feedback to Blue Cross Blue Shield Evidence Street and other private payer policies.
Concerns regarding molecular diagnostic tests helped to spur the rise of Laboratory Benefit Managers, or LBMs. LBMs are used by commercial, third party payers as an outsourced option for medical and coverage policy development, technical assessments, claims editing, and network services. Use of LBMs has resulted in a rapidly growing trend toward the requirement for prior authorization for payment of molecular lab services. In general, LBMs have presented substantial challenges to the lab community who do not have direct access to the patient at the time of test ordering.
AMP encourages our members to submit concerning private coverage policies to policy@amp.org for the EAC Coverage Subcommittee to review for potential comment.